I have shared all tabular data and statistical code to reproduce statistics and figures for all papers where I'm corresponding author. I have released curated hardware plans, protocols, image sets, and software where I believe it would be useful to the community. After 20,000 downloads, I think this is the right way. Ask me how.
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Publicly available data, images, statistical code, and software
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Seethepalli, A., Ottley, C., Childs, J., Cope, K., Fine, A., Lagergren, J., Kalluri, U., Iversen, C., and York, L. M. (2024). Root images for testing concatenation and statistical analysis with RhizoVision Explorer [Data set]. Zenodo. DOI: 10.5281/zenodo.12667583
Seethepalli, A., Ottley, C., Lagergren, J., & York, L. M. (2024). Python script for root image concatenation for RhizoVision Explorer [Software]. Zenodo. DOI: 10.5281/zenodo.12668073
Seethepalli, A., Ottley, C., Lagergren, J., & York, L. M. (2024). Statistical aggregation in R for RhizoVision Explorer and manuscript figure code. [Software]. Zenodo. DOI: 10.5281/zenodo.12668177
Lagergren, J., Pavicic, M., Chhetri, H., York, L. M., Hyatt, D., Kainer, D., Rutter, E., Flores, K., Bailey-Bale, J., Klein, M., Taylor, G., Jacobson, D., & Streich, J. (2023). Supporting information for "Few-Shot Learning Enables Population-Scale Analysis of Leaf Traits in Populus trichocarpa" (1.1.0) [Data set]. Zenodo. DOI: 10.5281/zenodo.7908197
York, L. M. (2023). Setting the scale for scanner or camera-based imaging platforms [Data set]. Zenodo. DOI: 10.5281/zenodo.7825934
York, L. M. (2023). Root scanning using a flatbed scanner with transparency unit [Protocol]. Zenodo. DOI: 10.5281/zenodo.7926796
York, L. M. (2023). Setting up the Epson Expression 12000XL for root scanning [Protocol]. Zenodo. DOI: 10.5281/zenodo.7925991
Xu, Z, York, L. M., Seethepalli, A., Bucciarelli, B., Cheng, H., Samac, D. A. (2022). Data for manuscript on objective phenotyping of alfalfa roots [Data set]. Zenodo. DOI: 10.5281/zenodo.5879779
Dhakal, K., Seethepalli, A., Griffiths, M., Guo, H., Freschet, G. T., and York, L. M. (2021). Data and statistical code for the manuscript on RhizoVision Explorer for root image analysis [Data set]. Zenodo. DOI: 10.5281/zenodo.4677552
Dhakal, K., Seethepalli, A., Griffiths, M., Guo, H., Freschet, G. T., and York, L. M. (2021). Images of copper wires with various diameters for validating root image analysis [Data set]. Zenodo. DOI: 10.5281/zenodo.4677545
Dhakal, K., Seethepalli, A., Griffiths, M., Guo, H., Freschet, G. T., and York, L. M. (2021). Scanned images of roots from wild herbaceous species, trees, maize, and wheat [Data set]. Zenodo. DOI: 10.5281/zenodo.4677750
Griffiths, M., Seethepalli, A., and York, L. M. (2021). Data and statistical analysis scripts for manuscript on switchgrass roots in nitrogen and water stresses [Data set]. Zenodo. DOI: 10.5281/zenodo.4281436
Seethepalli, A. and York, L. M. (2020). RhizoVision Explorer - Interactive software for generalized root image analysis designed for everyone (Version 2.0.2) [Software]. Zenodo. DOI: 10.5281/zenodo.4095629
York, L. M. (2020). Plans for root scanning trays to use on flatbed scanners [Data set]. Zenodo. DOI: 10.5281/zenodo.4122423
Guo, H., Griffiths, M., Seethepalli, A., Dhakal, K., and York, L. M. (2020). Protocol and data analysis scripts for high-throughput phenotyping of specific root respiration [Data set]. Zenodo. DOI: 10.5281/zenodo.4247872
Guo, H., Ayalew, H., Seethepalli, A., Dhakal, K., Griffiths, M., Ma, X., and York, L. M. (2020). Data and statistical analysis scripts for manuscript on high-throughput phenotyping of root economics in wheat [Data set]. Zenodo. DOI: 10.5281/zenodo.4247893
Griffiths, M. and York, L. M. (2020). Root multiple ion uptake kinetics data for maize NAM founders, statistical code, and RhizoFlux hardware plans [Data set]. Zenodo. DOI: 10.5281/zenodo.4474523
Griffiths, M. and York, L. M. (2020). Meta-analysis of multiple ion uptake kinetics in crop roots [Data set]. Zenodo. DOI: 10.5281/zenodo.3605654
Seethepalli, A., Guo, H., and York, L. M. (2019). Root crown images of soybean and wheat and statistical analysis for RhizoVision Crown [Data set]. Zenodo. DOI:10.5281/zenodo.3598638
Seethepalli A. and York L. M. (2019). RhizoVision Analyzer: Software for high-throughput measurements from images of crop root crowns [Software]. Zenodo. DOI: 10.5281/zenodo.2585892
Seethepalli A. and York L. M. (2019). RhizoVision Imager: Software to control machine vision cameras for plant phenotyping [Software]. Zenodo. DOI: 10.5281/zenodo.2585882
York L. M., Young C. A., Mattupalli, C., and Seethepalli, A. (2018). Images and statistical analysis of alfalfa root crowns from inside and outside disease rings caused by cotton root rot [Data set]. Zenodo. DOI:10.5281/zenodo.2172832
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